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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs80290022 chr6:151763721 G/A NEK5 chr13:52607747-52703214:- 0.66 7.68 9.12E-14 Box Plot
THCA rs80298899 chr6:151760252 A/T NEK5 chr13:52607747-52703214:- 0.64 7.51 2.87E-13 Box Plot
THCA rs8032759 chr15:31030661 T/C CHRNA7 chr15:32215641-32465219:+ 0.31 7.23 1.94E-12 Box Plot
THCA rs80331108 chr6:26632504 T/C ZNF322B chr9:99957633-99961910:- -0.63 -7.52 2.77E-13 Box Plot
THCA rs80348658 chr3:96783750 G/A PRPF31 chr19:54618790-54635150:+ -0.38 -6.01 3.63E-9 Box Plot
THCA rs8041248 chr15:31019129 A/G CHRNA7 chr15:32215641-32465219:+ 0.3 7.1 4.56E-12 Box Plot
THCA rs804276 chr8:11625008 G/A SGK223 chr8:8175258-8244008:- -0.31 -5.93 5.77E-9 Box Plot
THCA rs804280 chr8:11612698 G/T SGK223 chr8:8175258-8244008:- -0.36 -6.59 1.18E-10 Box Plot
THCA rs8042945 chr15:31021288 A/C CHRNA7 chr15:32215641-32465219:+ 0.3 7.1 4.54E-12 Box Plot
THCA rs8045276 chr16:29025978 A/G C2orf86 chr2:63348537-63815851:- 0.22 5.88 7.55E-9 Box Plot
THCA rs8048666 chr16:30331730 G/C NPIPL3 chr16:21413451-21458484:- 0.19 5.88 7.84E-9 Box Plot
THCA rs8050176 chr16:30326571 G/C NPIPL3 chr16:21413451-21458484:- 0.2 6.13 1.85E-9 Box Plot
THCA rs8054179 chr16:30332586 G/T NPIPL3 chr16:21413451-21458484:- 0.2 6.11 2.11E-9 Box Plot
THCA rs8061485 chr16:20474682 T/C ZMYND12 chr1:42896000-42921938:- 0.26 5.93 5.93E-9 Box Plot
THCA rs8067819 chr17:67624289 C/A HAP1 chr17:39873994-39890896:- -0.43 -6.22 1.1E-9 Box Plot